NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10000133

Scaffold Ga0213869_10000133


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10000133 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58109
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (89.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004712Metagenome / Metatranscriptome427Y
F013640Metagenome / Metatranscriptome269Y
F042922Metagenome / Metatranscriptome157N
F048351Metagenome / Metatranscriptome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000013320F013640AGGAMAIDNIILAPESFRTIYLRREDRVIMRTERGDKIIIKRIIPDDWVPYRIFEYETQLNENKKEILLFDNTMLNQVTREFKNSVSTD
Ga0213869_100001334F042922AGGMASRANIYIDKGLDFRTELNLFNDEGVEYDDATISVYNFYSSIRKVYSTTAATNFTIEVANNDITLVLTDQQTDLLAPGKYQYDVVMEKQTGELTKIVEGLAIVVDTITEVS
Ga0213869_100001336F004712AGGAMSITTITTSQAPDAKPVAFAGTLATNEVVIMTVPNYLVPELVFGGSSVVEPGVGEIISPLVLCNITNATVTVDVYIYREDTALVHYILKNFPVPAYDTIPIPLNGQFLKSGDKLSAEASADLAIHATLSFTLGQSEEDDVV
Ga0213869_100001339F048351AGGMADIDKMTRSNTGAILSTDAAALNKYKIERNYYRKVDRIQNDILDIKKSILHIYERIEKLEEN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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