| Basic Information | |
|---|---|
| Taxon OID | 3300021358 Open in IMG/M |
| Scaffold ID | Ga0213873_10000005 Open in IMG/M |
| Source Dataset Name | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 416778 |
| Total Scaffold Genes | 369 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 209 (56.64%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Brazil: Minas Gerais | |||||||
| Coordinates | Lat. (o) | -19.2822 | Long. (o) | -43.5936 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006775 | Metagenome | 365 | Y |
| F067094 | Metagenome | 126 | Y |
| F089128 | Metagenome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0213873_10000005146 | F089128 | GGA | LTLFLNLLLGLVPTLILGASIAAGVDDDAHHRRVFLLVYALWAFTLAGWNWHESASAAWIVVWIAFGLIALVWRALRVRVNGS |
| Ga0213873_1000000558 | F067094 | N/A | MHNVMSYTDWLRRQVERLEDEIRRHSVFDSDRPASMVQLRELRSKVVIHTYLRQQLLRRETPVVLDEEYDTQEFVVVRRAQ |
| Ga0213873_1000000591 | F006775 | GGAGG | MQLGKDSCACGHPIDGHDGGRGGPCNVCACAAGEPPTAFQVGLIHALHEVTVTLVRLVKEVQAARGGGAPQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |