| Basic Information | |
|---|---|
| Taxon OID | 3300021358 Open in IMG/M |
| Scaffold ID | Ga0213873_10000002 Open in IMG/M |
| Source Dataset Name | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1164195 |
| Total Scaffold Genes | 1068 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 650 (60.86%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Plant-Associated Microbial Communities From Velloziaceae Species In Rupestrian Grasslands, The National Park Of Serra Do Cipo, Brazil |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Brazil: Minas Gerais | |||||||
| Coordinates | Lat. (o) | -19.2822 | Long. (o) | -43.5936 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002064 | Metagenome | 597 | Y |
| F002279 | Metagenome | 575 | Y |
| F002338 | Metagenome / Metatranscriptome | 569 | Y |
| F066113 | Metagenome / Metatranscriptome | 127 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0213873_10000002267 | F002338 | N/A | MQELKAEKPIESPAGTDPVLRLLERLSEEGFTTEQGPEWWDEYGEVIYRRDEHLPLTKGETVFIFTRIPELNERILRQTSESVVQTYRAKSATQMALSVLQSTTVYHCLVCTNDEPHNEPLSEYITRSGGATFIPVVIVPGINEVVYPNLEDKVGVVRPRVEYLQYLLGERREPVNMHKTTVQALWISLAIVALLLVAVIFSFVT |
| Ga0213873_10000002711 | F066113 | N/A | MAPEFPIRILNDEGECEVIASPEELMERIDSIDSTDPAAKIWVRDAYDRTVRIRMRGGMVVELSC |
| Ga0213873_10000002808 | F002279 | AGGA | MSANPIAPPHPDWSRLVGDSLKHNGPWHTYAKLLEARRVYPDDLSLRGYVELVRNAIVRELLAHPRGMQAVPKLSAEFLSNFDRFNLNAQEGYLVSLIDGRLDLQKLLILSPFDPFTTLFILAKLQQERAITVPQ |
| Ga0213873_10000002988 | F002064 | GAGG | MTAVETVPTNLTAQQLGQLFQYTVEAYKTFQKFAENLPNPVARDLFKFFAIDERTNRDLLEMKVAATEGGRVRATLGPDLIFQELLEGEMSFRNSAEFLIGRERALQRRLRDYLGNATPADRSLLVYLESCKRSHVVELERELELIKNDPDWWKREDAEYRLVHGASPA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |