NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194047_10020396

Scaffold Ga0194047_10020396


Overview

Basic Information
Taxon OID3300021354 Open in IMG/M
Scaffold IDGa0194047_10020396 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L221-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3259
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.701Long. (o)-93.727Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033800Metagenome176N
F096647Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0194047_100203965F033800N/AMSRHICGDNLLCGEYIFTIMDNTYIALKKILNIMVPEKYPRVSDIKVIDDSYYYVKNYIVYLGVVPNDLELLRSSDIREYVKDVSRYVLKGGEKLRIVFYNPDL
Ga0194047_100203966F096647N/AMKRLVWEFLNTKYNGVMIYHQLFNLSDKLMEKFITDRGDGIIEFVRFHSGKDVRTRVNNFLVGDIIRYFDIDRFDVEIYVLEWCRHKSSKVVEM

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