NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1006027

Scaffold Ga0213867_1006027


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1006027 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5196
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026158Metagenome199Y
F038462Metagenome166N
F047368Metagenome150N
F050008Metagenome146N
F052258Metagenome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0213867_100602710F026158GGAMLQFSSTTESKASAVQCMEGFRDKIEMLMKAGDILDHCTRGRSTVEDAQAAREKSLEIWKKGETIVEAARQGGAYAPSFREWLIKEGHHTPRGK
Ga0213867_100602711F052258N/AMKKTKQIETEHKLVNSEREAEAAMVLFACILGGVILILLAIAMG
Ga0213867_100602712F050008AGGMSLVNMNETQRELVLDLAEDFAPFVKKVESGMALTRNHYGAYGSMISKLSKGNRKLALVFSYALMMAGANGQGISDAMGAFFPE
Ga0213867_10060274F038462N/AMNEIKVSTEQIDPYTEVFALDVDDVSLQRLQYGEVGSPHPYVRVADITKALQQRAPRCDSDLLDLIDNQGYTYCFFASEGEVTKNKHRCVAIYSPTGQQLTGVAEGFETVREALGYVMDMEEQS
Ga0213867_10060279F047368AGGAMPNKCGAIKHAHTEDEALKHLAVGNKSKGYKLKRSGVSIIVLNIEEIKDT
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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