NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1000517

Scaffold Ga0213867_1000517


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1000517 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17338
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (90.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012114Metagenome283Y
F018906Metagenome232Y
F032992Metagenome178Y
F093724Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0213867_100051730F032992AGGAMNKTMDPNFRYYDVDGIVDGITGVEQDNLSIMVAVPRIDLSTPENRYENLLAISGIVEQQYRRPVESFNSPKEYTGL
Ga0213867_100051732F093724AGAAGMDMPYYFDEFETEDIQDWVRWAGNEIPKAKLRGEDVEAWENIVRSGAKELLRRYKDDE
Ga0213867_100051739F018906GAGGMKTCRVNPLKLNETRFEAAAHEGGRYVKRYYFSNGLGASVACHSGTYGGHAGYFEVAILKYPLGTDPEITSELIYDTQINRDLGCVDVIGWRDFFEVADILQQIRNYNTGEYAYNE
Ga0213867_100051740F012114AGGAGMTDREYYNCVFPVSRPNVWVVYDAQNGNKIGEVGAMSENEARQKVAQHVMIPFRLSHIEE
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