NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213867_1000094

Scaffold Ga0213867_1000094


Overview

Basic Information
Taxon OID3300021335 Open in IMG/M
Scaffold IDGa0213867_1000094 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39092
Total Scaffold Genes76 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)61 (80.26%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008558Metagenome / Metatranscriptome331Y
F009636Metagenome / Metatranscriptome315Y
F101346Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0213867_100009437F009636GGAGMGYFYQDWKEKKMFVENSEGQFVMNFGEAEKSMIENLERAIINITEGASDEKRMGVGYMEYLVDCLKKGKVEVKWNIS
Ga0213867_100009438F008558AGGMEYLIGEEMFNNVGHPIEGWAILKCESDNQPEIVSLHQCLGNAEEEKMVLNEMAEGTDTTFVVKETFGCMIETV
Ga0213867_100009446F101346AGGTGGMENDEKTTNIVQFPKKYMGIAPKVTNFDAMRLNKELQFADELTDGIMVSMIHNMDENDIEITDPGFIQDIAFLSEAIKATIYRDRGFTHPFQNLIELIANVTYDEKEKRHHVDMDMDLIRELSEDFEDDGPEKA
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