NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0223825_12941751

Scaffold Ga0223825_12941751


Overview

Basic Information
Taxon OID3300021255 Open in IMG/M
Scaffold IDGa0223825_12941751 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from New Zealand - Tag 1494 SPADES assembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)34247
Total Scaffold Genes69 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (30.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Cattle And Sheep Rumen → Cattle And Sheep Rumen Microbial Communities From New Zealand, For Comparative Studies

Source Dataset Sampling Location
Location NameNew Zealand
CoordinatesLat. (o)-42.26Long. (o)171.6Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048027Metagenome / Metatranscriptome148Y
F082826Metagenome / Metatranscriptome113Y
F089629Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0223825_1294175129F082826N/AMHKYTIQMNYNASIVVEVLANDEGEALDKARDKAEDADIRQFTIGSENESKILRTD
Ga0223825_1294175132F048027AGGAGMTKKVTETKKAKFSLDTRVRLVAENEGGKGVKMPVWFNLPQHKELRQQHIDICKGLVALSVAHGNYPITYLVYFAVGKNAHRKEVFEDGYTKFDEKKAEKIFSWLKIFAKYHKNEKLFRNPNVAHALCRFYDKFSTKTKDFKAAMELMESNPKVDVKNAKAIVEGMGIAKRTEESELAAAETAMEPAVVTA
Ga0223825_1294175160F089629N/AMKQSNFSVSELLIAVVDVFSTIAACKDFASCKFGYGFIARSAPKFRAPKATATEWLNQFGSEMPNIVKITKVTNARAYDYAKAINRQLDKQGDAANFKSDAMSGYDWVVPNIIKRAQKDGNLQLCVTFKENDRTKFESFYIVTDHFATEDELEFIKEHLYKAPNKSVKQSESGIADEDIVMVRNYKFSNIVAVGQTPQIEEMWANIAE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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