NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210388_10251785

Scaffold Ga0210388_10251785


Overview

Basic Information
Taxon OID3300021181 Open in IMG/M
Scaffold IDGa0210388_10251785 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1550
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000214Metagenome / Metatranscriptome1570Y
F074116Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0210388_102517852F074116AGGAGMRQTFLLVAILALSMTAGAKDKVMSGTIVSENSVPCGSEAKGKKQTIELMCQEYVLRTEATEYHVRQEKEAHKEMIPVNAPVEMTLNKDKMKFKVNGKSYEMLVVSESAAPAAAAPAPAAAKP
Ga0210388_102517853F000214AGGMVMKNVYEVLRQKEMELTRLEKEVEALRLVAPLLSEEKEMISDMGKPALATAVNGPQATARISIPAPPSIPAPQPVRAAGWDDTAKRWP
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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