| Basic Information | |
|---|---|
| Taxon OID | 3300021181 Open in IMG/M |
| Scaffold ID | Ga0210388_10000336 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 39982 |
| Total Scaffold Genes | 43 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 35 (81.40%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Massachusetts | |||||||
| Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000188 | Metagenome / Metatranscriptome | 1692 | Y |
| F000512 | Metagenome / Metatranscriptome | 1064 | Y |
| F000536 | Metagenome / Metatranscriptome | 1044 | Y |
| F000696 | Metagenome / Metatranscriptome | 931 | Y |
| F000739 | Metagenome / Metatranscriptome | 913 | Y |
| F001619 | Metagenome / Metatranscriptome | 662 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0210388_1000033615 | F000536 | N/A | MVEFTPQQMQVLERLFAAGFRPIAIPPYESALCVRRGECAAVLSQIPNGGLKLLAPPSYLVDGNLSVRLKRGAGEVFVWKKTELPATPERLQEIATFRQELTDILELPQTQ |
| Ga0210388_1000033621 | F000188 | GGAGG | MSVKPELAFDVCWEVYRGAREVMESKRGISALNWKDTGKFLWRPDIRPRLNEWVADFALAGQKALEGPDWASRMVLFRLYYLGLAPYENARHFLGLSERSWVNWTEEVRNRCGKELLRRGMFPPRKYFVS |
| Ga0210388_1000033631 | F001619 | N/A | MLDWLREILQLKYVGLLEADVARLRAENRALMNSLLGTAGFPPVEFPEAPKPQILPRVRKRSWHQIQAWRQSGAERDAADNAEFVGALRTTGPVPHS |
| Ga0210388_1000033637 | F000512 | GAG | MATILVLRETHEAPENVTRRLERAGGINRFGEPNYRAVWGWNRLAWIGGKFEEHDPSTGTFLREVVELRQEPKYPAVNRWHIERWVAPEAYGSPRLWYAQTIERENGISIPALGPYPSRGEYEHCFTLEGPRGEFVQLTPAAAEHIARAIEFSRHLPRSSKRRSVDDRERREDRSYDAWAYDQLDNAVPAFHKQPFVTVV |
| Ga0210388_1000033638 | F000739 | N/A | MKRIELKQFEIWIKGIVAAAISGGAGGVLTGLAAVGIDPQHFNLQAGMGATLHIGAAAALINAVIGVAAYLQKSPLPSE |
| Ga0210388_1000033640 | F000696 | GGA | MPVVGSSAYNSAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDVLLVVTAVTETDSSLQVSVTDATAPPNQLPTDLLVPVKIWERPNCSTDDFLEMVDLTQHGGLPSREQDTTLSVWEWRADGIYFIGATQDTQIRLRYSKAYPDFTDSTSPVLVRNSQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVSAAVRREQQSARRRRPFSSRSGYTPF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |