NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210396_10004586

Scaffold Ga0210396_10004586


Overview

Basic Information
Taxon OID3300021180 Open in IMG/M
Scaffold IDGa0210396_10004586 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13501
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000540Metagenome / Metatranscriptome1043Y
F003596Metagenome / Metatranscriptome478Y

Sequences

Protein IDFamilyRBSSequence
Ga0210396_100045864F003596N/AMLRLLTKLGVSALALMLAALPVAACVLPGAAMTSAERECCKKMAERCGDMGMAKSHPCCKVTATTPSFHALKTASSQLDHASVVLFHALPLTAETGAYFSLAQWSSHVSCTHSPPGLESLTTTILRI
Ga0210396_100045865F000540GGAMPKKKASSIPPKLTEAEQDLLTHMEQGYELETNSLGGNPILRRLKDDEVIRPLSANRNTIKALEERGLIHSGKGNDPLTMVWHTNKKR
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