NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210396_10000414

Scaffold Ga0210396_10000414


Overview

Basic Information
Taxon OID3300021180 Open in IMG/M
Scaffold IDGa0210396_10000414 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)58094
Total Scaffold Genes83 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)68 (81.93%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000410Metagenome / Metatranscriptome1170Y
F011530Metagenome / Metatranscriptome290Y
F031198Metagenome / Metatranscriptome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0210396_1000041458F000410GAGVNRELVWIEQERSRGWGCSECGWVFKATGALAGKSLDEMMRNFELLRDNEFILHVCADHPRAKSTKSKKSE
Ga0210396_1000041464F031198AGGMAERLKTREAELTTADLASYGIPPKQPEGPKLVKGQEPETPDKAAADSKPMPLCSE
Ga0210396_1000041474F000410AGGAGVSQSDPKMRMLRILVWIEEKRFRGFGCSECAWVFNASGSPTGKSFDEMMRNFESQRDAEFSSHVCADHPRKSR
Ga0210396_1000041476F011530GGAGGMEEFTELMQRLLEIQSGGRRRSPQRIEEDARLMDGLQKSSLAGEPIQTVRLSQDSAERVRFKA
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