NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210408_10062260

Scaffold Ga0210408_10062260


Overview

Basic Information
Taxon OID3300021178 Open in IMG/M
Scaffold IDGa0210408_10062260 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2916
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces cellostaticus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030201Metagenome / Metatranscriptome186Y
F064693Metagenome / Metatranscriptome128Y
F079169Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0210408_100622602F030201AGGAGGMTATHRPRPGRIMAGLRRVIHALRYVDDELMRASEAIIRSARAPQPRPQVQATASGDRETAEQVDRAA
Ga0210408_100622606F079169GGAMAELPGATQDARIADERYVRSQRRANPEGRMPLFDHLRELRNRVVTMAK
Ga0210408_100622607F064693N/AAPQFPQAQLTAAPSQSAQGATAPADQQSQIDALQQQIRDLQRSAAMDTPAGPGSAAEPQGTQQPS
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