NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206687_1105180

Scaffold Ga0206687_1105180


Overview

Basic Information
Taxon OID3300021169 Open in IMG/M
Scaffold IDGa0206687_1105180 Open in IMG/M
Source Dataset NameMetatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3101
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)30
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010105Metagenome / Metatranscriptome308Y
F012164Metagenome / Metatranscriptome283Y
F014036Metagenome / Metatranscriptome266Y

Sequences

Protein IDFamilyRBSSequence
Ga0206687_11051801F010105N/AMKNLHTFESLNESKDMDTIKKMVLDYAEKNGKSKWKELQALIVKDKGLDPADRKNRGYFSSYFSGGSDFLVRRGLDKGAGKHGRSANSHGLLMRPTKKDPRYLEKDGKDYIVKVWDGKS
Ga0206687_11051808F012164GGAMSTELKTLKGKFWNQETSELENTELSLTRFSGGKEGMKVQLTIRSNNKFFTHIALDREQIKNLVKELQQNFDI
Ga0206687_11051809F014036GAGVILDFLGILFILLLSFVFHCVVWEDDWVKEWYWKTLIGGSILLVAFMAIMGY
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