| Basic Information | |
|---|---|
| Taxon OID | 3300021139 Open in IMG/M |
| Scaffold ID | Ga0214166_1011100 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - Practice 18AUG2009 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2541 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.0412 | Long. (o) | -89.6864 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007918 | Metagenome / Metatranscriptome | 342 | Y |
| F008991 | Metagenome / Metatranscriptome | 324 | N |
| F010534 | Metagenome / Metatranscriptome | 302 | N |
| F014823 | Metagenome / Metatranscriptome | 259 | N |
| F015440 | Metagenome / Metatranscriptome | 254 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214166_10111001 | F015440 | N/A | MEGISENERNFQLFKAGLSMVSCLTGEAIRVLEANLKGLQGLFFGLGQWGVIMSICIEYHEKSLVKHKELICERGAKIAESLTLPLIRNLRQLRDLCNKNKSEQTLLELNTFKFHIDYLSNMRSDQWTQEMLKTHIFIVIQQEMDNI |
| Ga0214166_10111003 | F008991 | N/A | MHLTVKITEQVEKKLEAVLKGKYDNRTIWMYYKVSLQMLRDILEDLIACHHTTYPLAEKDLYYEQNKVQIVDWIQWIQNRISSDKLVDLDKLLSKLIKDKAENLVEALTEENPSDRMTTLSMLQMSIQMALFTEVQQLLRSPIVIQFCEENGWTI |
| Ga0214166_10111004 | F010534 | AGAAGG | MSDKVGEKQEAIMNLIDQQIKESLKDQASRLEILQDRIKDAIDISTTEHSQGIKQVMLFVTKAHVQAWITSLKHKVDTAGDCEICDLEKILGEESLEIAEAVKVALSNRNEETRNRILGELLEKTITKTEALSVRVSPAP |
| Ga0214166_10111005 | F007918 | AGAAG | MCDTTLEKSDPFLNLEPDMEAGIKQELLSILTNVETLTEAMNRVILKEEGRREQFKILCSSIDYLFGENIEMIEKRKDDLKEIDPSLQAIDCKLSTRMERLRNVATKPDLESMKTEMEKVLSQQRIEKFQINPQQEEQRPQKG |
| Ga0214166_10111006 | F014823 | N/A | AADELTSVVAQIIYKEIKRRKEFRNLLMSVEQTLSTSMRRVHRKVIELRKENSKISKEVLELEFDLERIREVVMSPNLEQMRTLIEDIYDWKVYRQSRSEKEIENLQSTAVAEKKVDLPESLEVL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |