NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214187_1002528

Scaffold Ga0214187_1002528


Overview

Basic Information
Taxon OID3300021126 Open in IMG/M
Scaffold IDGa0214187_1002528 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 24JUN2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3076
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016494Metagenome / Metatranscriptome246N
F023520Metagenome / Metatranscriptome209N
F024962Metagenome / Metatranscriptome203N
F028416Metagenome / Metatranscriptome191N

Sequences

Protein IDFamilyRBSSequence
Ga0214187_10025284F028416GGAGMNEQPINGHAIVTRPERHPNVFRLRRTWLKVAGEALDLLNLIDVTQPNTAADNTLVFGAIYDKVKQLKRIDPDKLVNQDTMVQATVIKYDCPNCLPTDNIYLADYELDC
Ga0214187_10025285F023520N/AMATTKERKYVKCCDAKSRDKRIESIDDLLSAINLIFIQNMFEEGDDDTALLHHLYKAKLKALSIKPELTLVNETHLLINKILEGVDSIETSKEWSHLDNKSKFIEIEQAMTKLRLCYPLWKLNRYDIEKYSTCLCPNCDSIDVAGGKTLEKLGGLTLEL
Ga0214187_10025286F024962AGAAGMKILKSIIKEQVENKIDPILKEKYQENIALKLFRASIEIIRESVDRLTEMYYFDYPQYEKEDFVKEVELHVFEWKSKVQERSAENITGLDQLLSSKIIDTLEEYLEAIEEVNIDERQRKLYYVDSFAAVWNHRKIEDIIRHPWSIELCRRNNWIAEMPKDD
Ga0214187_10025288F016494N/ADNFTELTQLVKSTLQTVDELFPPKPEFSFENMVVQFYTLKSRIKRIDPSWKFENTDTSYVFEILKLLDAVNTEEIPDLQQNAKICQRLLHRVRIMRQINPSWNLDVEGIIKFLYPALNTQLS
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