NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214195_1004095

Scaffold Ga0214195_1004095


Overview

Basic Information
Taxon OID3300021122 Open in IMG/M
Scaffold IDGa0214195_1004095 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 19AUG2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1749
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011134Metagenome / Metatranscriptome294N
F045532Metagenome / Metatranscriptome152N
F073465Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0214195_10040951F045532AGGMETLELIEFPNPYRKTSFKAYLFWTGISTVANHAIANTITCIFIRTYLAMIVALILLFNKNKSIIHRLMIYLIYLEVNPRIRIIENLNYSVMVIRLGMLSMSLEQIILNPNMEIAHAIILIHLIVVA
Ga0214195_10040953F073465N/AMSNWRYRWRRPRPRYRPAPPAPRIEAVPIRNIEALLMAVIQAMNAIPPSDNFDTALATRLYYTVMCLRRFFPEWGVYLTPVHNSNRIIPHQVDDQGFSELENDSETEPLISDV
Ga0214195_10040955F011134N/AMSTFTKSEENYDSKETLVDTIKTDLVSQFKMCVDDINTEIIVINESNVTQYEKLNEVLINLRRLDPEWNIDSNSDKPWSFKYMLEGILRCRILEIDISDLDTLDMDGYENFHDSLRDLRVEDPGWSINNTRRDFPILLTSEDIGLMNNHLESREK
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