NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214205_100817

Scaffold Ga0214205_100817


Overview

Basic Information
Taxon OID3300021118 Open in IMG/M
Scaffold IDGa0214205_100817 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 29JUN2009 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)4398
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F032529Metagenome / Metatranscriptome179N
F058685Metagenome / Metatranscriptome134Y
F075668Metagenome / Metatranscriptome118N
F104447Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0214205_1008174F058685N/AVPVSICNQMIKKNRPKRKILLNPGVKSVRALIKNKCITRLAKQRSIIKNKKLNLLIKPCTGGKKLKFNHPNGSSINKRVVVNYPFIPVKLHFLSKKSREWIKLASPMKAIKPSIPAKPNILINKNVLADQITYLIRLASYNMKVKSFIPDKLSVLINNSTLGDQITQSKVNYPFIPIEYIATNEKSNIMEEKSILRIDRSTPVGACSFQKRIQGTQIPVFPIPARTILW
Ga0214205_1008176F075668N/AMSNKYSVNDVRCLVMYALNKVDTQKDFCENLRVFSGLYIAIMAFKIYEPNKQFELEKGPLLCEQNHSSFYNSRSNKSCRKINRLNQFYE
Ga0214205_1008177F104447AGGMTIHQLRLKNEFCDIINSIAVKKDFDSNARQYVRIHEILKEVKTINPDWRLTACAKYSWK
Ga0214205_1008179F032529N/AMAESRRLIDVTDTERARMKAILEEQLPGEEYAATRESCLRNLSVTKHARFHALIQERYPGNSEEQIRRRALAWEKLYEIRQVPVKENTSSKETGVEDTSCEVTSSTDTTSKNEAKK
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