| Basic Information | |
|---|---|
| Taxon OID | 3300021118 Open in IMG/M |
| Scaffold ID | Ga0214205_100168 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 29JUN2009 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11830 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (18.75%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Branchiopoda → Phyllopoda → Diplostraca → Cladocera → Anomopoda → Daphniidae → Daphnia → Daphnia pulex | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F032253 | Metagenome / Metatranscriptome | 180 | N |
| F046332 | Metagenome / Metatranscriptome | 151 | N |
| F075719 | Metagenome / Metatranscriptome | 118 | N |
| F091313 | Metagenome / Metatranscriptome | 107 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214205_10016810 | F032253 | N/A | MSQATETMNNDPRMIVKNLKESIVEGLPFLALLMKRLMVAINKLPHLVQIVIAPIAEQAQAKTAEMILQYESALLQNETLGKEDLITPVRFDVDSSNPAIISPEIRNIIATSLNELQATLYMIDMADQIISMISQLDFNRGTTATAIEAMKRLATDSKNIIDLPELKIGETIEVPISSITDPIGLLNATGIAEILLQR |
| Ga0214205_10016816 | F075719 | AGG | MTLKDLVVEPRGGTSVVLDMTIKDLVKESKLDTFDVEESHKDTLDPDMSLKDLACDSVGNHRKGVIPFTDLMCELSNNRMVCEKLTEPKNSKGKHPQKGEPKESSTGPRGFGTLMEPNTLDKKYLTGNFLGKMVPKTGRSRAGFERLMEFGESESSDEEVNFRNHKKVVGLKPPRQLNNNRKFGTVIQPANTSRFDNVYHRVYEHQKQVVEIDNENWFRKLCCCRKSPKEIVTIVDFSVGTRLKKDTSAV |
| Ga0214205_1001682 | F046332 | N/A | MNQSAQVSSSGHNRYTSMVSQGPLINGWCHERDQLVRRLIKMVNDVFVDDHYPGDNLVWVKPMREIADAIVRLDPSWRLECVTERYKCMVIKHPNCFCDRPITRANQ |
| Ga0214205_1001683 | F091313 | GAG | MATQSNDDSSTPEYRLIDGRYKIVPQFLQPTDSKVGEIIDAMTKCQRLSYLFPNRDNLAEQFVDLITKFVHGNFEDPRDFVHEMKDVLHQIHLYDDDWELKVRTSNDGHLIFRHYNCKCDDIIQHESVSSSQQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |