NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214174_112343

Scaffold Ga0214174_112343


Overview

Basic Information
Taxon OID3300021115 Open in IMG/M
Scaffold IDGa0214174_112343 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 31JUL2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)703
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013499Metagenome / Metatranscriptome270N
F051691Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0214174_1123431F051691N/ANRLGKVAGIRKDMCKVMPPLGHRVRTLHTQFTQLTDAEKDLIRPRLENALDKVLIMVRKINHNFQEEAVRNTYQDSLIHE
Ga0214174_1123432F013499AGGAMSEVMKDIGITISGIKGLIMLLQAHQRELVSKGEPDPSEGSLEAARLAIDQLKEKIEAIVGPEEPTGAEGFEVEVHESEDQPQT

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