NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214186_100745

Scaffold Ga0214186_100745


Overview

Basic Information
Taxon OID3300021112 Open in IMG/M
Scaffold IDGa0214186_100745 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 13JUN2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2807
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016243Metagenome / Metatranscriptome248N
F017597Metagenome / Metatranscriptome239N
F019778Metagenome / Metatranscriptome227N
F022147Metagenome / Metatranscriptome215N

Sequences

Protein IDFamilyRBSSequence
Ga0214186_1007451F019778N/AMSSNVASQAELIFLYIGESRLIKRISNNILLVLHEDAKSINTIKLKELLQFKIRGRLSYLNHLAMSTVKEEAKYASALYTQLDSLLAILSSDDKVTAIKLITKICSAYRASKETVQSTAQTSNNIEKMEIG
Ga0214186_1007452F017597AGGAMKKIFRSEKLLIKLAIKKKELIKTTKSSKSTLIKTEMITRILITALKAKQVIAIRFQVNRTNNLQIWGQKS
Ga0214186_1007457F022147GAGMQHEKDEYIFQLVTRAVKEIDSSEICRKREIFKILAKSEVSLEMKQILAKSARVISELQHYTEEVYNVSQYILVHYFKIDDLIKKESYPLQEVITFHNKKYRIQKSKDIVTLEKVSIANKLLIKTLSEEVRNALKEQLALVSKVGSTFTNLSLMYTYIENKDLSLQSEAKSRQWSNEYQE
Ga0214186_1007458F016243N/ATKIVMRLATRSKWSIEVRRDKVSQMIAEEIQRSDELNQALMELDILLDKLQKVYQEVDDVCEHLLKHYLKSEYIQMHRPSFLNTNTIKDSKAEFIQRLLEVSDSRESLKIQDSEITTHSIYHKIDPGLRIALNNNIVTLLTIDNELIDLKVMYEFLIENCDNE
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