NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206679_10001039

Scaffold Ga0206679_10001039


Overview

Basic Information
Taxon OID3300021089 Open in IMG/M
Scaffold IDGa0206679_10001039 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23065
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (15.15%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.7468Long. (o)-122.0193Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009300Metagenome320Y
F014804Metagenome260Y
F018080Metagenome237Y

Sequences

Protein IDFamilyRBSSequence
Ga0206679_1000103927F014804GAGMTDDWIDNILDGEPSGITDTQWLIIEGNIDLTSFTERMKSDILGRINDLTELEAEEIITKIYENRYEKDTRKQWEKMCKDGVFGHRDF
Ga0206679_1000103928F018080N/AMECLDIEIFNHFLKVYTYIIWNKKHLLGEIVEDDIMKILDKQQLIDFYHVGKTKFKVEKSKIEKYIKRDDK
Ga0206679_1000103932F009300N/AMIKWKKTTYPSTFIKLSDELAKVRSMLSADVYNKNTEKYRGKQEHSISQLGIFAELIARHLMENNNGIKYKAAPLLEERPVVEADLIMQGIGELNYIDVKGVRSGGNTLRVNFKAHNNPKKKITHYLFIQPLNALYARFCWFTHEQVSEWTVVMSTYTECYELEIPKNN
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