NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210404_10076873

Scaffold Ga0210404_10076873


Overview

Basic Information
Taxon OID3300021088 Open in IMG/M
Scaffold IDGa0210404_10076873 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1635
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000440Metagenome / Metatranscriptome1137Y
F001138Metagenome / Metatranscriptome767Y

Sequences

Protein IDFamilyRBSSequence
Ga0210404_100768731F001138N/ANLSLIALLSLIVWRLVFAGLHRRLLVKTTDQQQQRRANILAQGFHALDLARAAVIPDNRLENGSDGVPVTPQDRAKTYLRRIAALTGATQIDDAYVLDIGKMRFHVRDRYVGRLRDVSNLECGYEETCFYPVHKGMPKAEEIATALLQLTNNPALFDKWAVQNGLAFKADGQVFTRAH
Ga0210404_100768732F000440AGGVRTDRLAMRKPTKCTPAQRATKYLKRIAALTGAKQVCGESYRLTAGRRHFLVDSKFVRVISPRSESTCFSVAAVPDMPSAEVVASALLQLKNNARLFEKWSDWPAHTFKANGKMFRDTYQLTRDGT
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