| Basic Information | |
|---|---|
| Taxon OID | 3300021086 Open in IMG/M |
| Scaffold ID | Ga0179596_10000034 Open in IMG/M |
| Source Dataset Name | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 166477 |
| Total Scaffold Genes | 145 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 107 (73.79%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 39.7291 | Long. (o) | -123.6419 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000290 | Metagenome / Metatranscriptome | 1362 | Y |
| F000386 | Metagenome / Metatranscriptome | 1203 | Y |
| F000407 | Metagenome / Metatranscriptome | 1172 | Y |
| F032158 | Metagenome / Metatranscriptome | 180 | Y |
| F075092 | Metagenome / Metatranscriptome | 119 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0179596_1000003410 | F075092 | GGAG | MHRRKVAMTAAAAFAIGVAFAAQPTSVRADRISGAVQQRQPWVPGTNMLMSAHEPSVVPLAPPR |
| Ga0179596_10000034107 | F000290 | N/A | MSKSPNARRLGGPLAWEELSRPDADQNQRFLAESLSLLLADLLRSVLSDASPALPADEFAVERYRNLADSLADGESRRRTSLGITRAGLAKRCVTWLKLLLTPAPNSSTAAPMREFVDALALFPALFDSEPSARSRRARLTWLLTHDRRLDASTREAATALIEACEHLGVLLWPDAETA |
| Ga0179596_10000034110 | F000407 | GAGG | MLRSAAAAVAMAGLALAACGHSGYAIRPVPRIAADHVGKPVRELQEAFGAPRKIETTPTKLVYVWFLEQTPAGAPAGFHGCEMEVSVDPRSEHILGYSQSNIGWAKCSEIVRKTHVGER |
| Ga0179596_1000003441 | F032158 | GAGG | MQDSNGLKRTFLNRRDWGSYLRALQSAATYPKVREAVKSSRDWFTQGASQASNWLVGSTTELCDKLSSTGLRDTLSGTELHDKFSTG |
| Ga0179596_1000003498 | F000386 | N/A | MSDSASLYLNLHVPPDEMVKYIQDLMTLPHGEIAASSAMTLAQRQWGGDTPLARAALLRWGALNLAFQDKRLETWTVTRERDRIQVPAALVAAAGVAPLVIDNERAVFDIPALLDATLEFQPPAGQA |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |