| Basic Information | |
|---|---|
| Taxon OID | 3300021068 Open in IMG/M |
| Scaffold ID | Ga0206684_1000199 Open in IMG/M |
| Source Dataset Name | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 100m 12015 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 23626 |
| Total Scaffold Genes | 30 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (53.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 36.6907 | Long. (o) | -122.3448 | Alt. (m) | Depth (m) | 100 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F016730 | Metagenome / Metatranscriptome | 245 | Y |
| F022752 | Metagenome / Metatranscriptome | 213 | Y |
| F025766 | Metagenome / Metatranscriptome | 200 | Y |
| F063761 | Metagenome | 129 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0206684_100019914 | F016730 | GGAGG | MIEQLKRWCIEVSKELCNETVSTAGTICDETKKANASFVKAIMDSM |
| Ga0206684_100019923 | F025766 | N/A | MIKTFEVASPDVQKDIDYIYDTVIKKNGKRSNNYLSENLKEPVVGVTVRYNEQGNPIATARMLSRTCYKDSVRVFDRYALIEGSTGLIPNEYDGLFKKSSSDMLDQQTDFCIEKGFKCMFISMELRVEKTLKRVIKGHNKYSKHLWHFDGPHYVTYNKSKGGLQYIGYTGNKFERK |
| Ga0206684_100019930 | F063761 | N/A | NAPSKQYEAYYDVYWTADRKVLEELSNYTWGTTHSRNPPSTWKNSQQNANMYMLFVAKEPDTQLNCNADGTLKGNATAARWENAYVSIGIAIGLVMRAASKLGFATGGNKSHNDMNGDDFWEKKLGILDEVNKGEKQIAYGIGIGFPKKGVERYESDQTLLAIGAANGSNLSLDSFKLDKHPRTGKKFRKIKIVDIKTTDKAQDPYGVWHKIPDRADIKINTMRKRDIKAIEIK |
| Ga0206684_10001996 | F022752 | AGGA | MATLSNLLGGGGGGTIDHRKEGMPLFGLFGATGDQNTHMTYRIFDSGFKMVGSPWGSVCNSTTNYRFGILGDASHAYNLNDFGTDIGHDNLTSETYSDWTKYFKSMYQIDQYPHAQYYTSSRDGFISWQSFHHYTSTFEYQNAWSKLNMVLPEGIRPRRTFCNRRNSMREITVGNNSCAAIDFYDYTSHKLNDDQTYATGTGYNEKNKMLVMVHAGDEGGNTSKLIHIFKSSKCLNQVTKIKDYFDNLTSTEYFTDTWTSQNNRDMTVAVGNNEWVGFGHKNGNNIRYAAFNCKNGQSLGTTGAARVYIGWQDFNGSTTTSYGATQGAQYYTKFNTTWDGTWGMIYAPYYYYGCGIDGWCMNLENPRKFISINQTKTSRSNPYVAWGRTGFHGGWSDNTDSEMWRTYSWSFDPTDSDHTTTTRVYYGSNDNNDVIRNDNSFRGTDVTNKTGNYGLTESRTGLHGGYYSTCYPVICGVDWWGNYGNQDAAYGGKFGVDSA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |