NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214219_1000590

Scaffold Ga0214219_1000590


Overview

Basic Information
Taxon OID3300020735 Open in IMG/M
Scaffold IDGa0214219_1000590 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 25JUL2007 hypolimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)13907
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (59.26%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007166Metagenome / Metatranscriptome356Y
F010592Metagenome301Y
F068376Metagenome124N
F069612Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0214219_100059014F068376GGAGMTNFKIEGKTHESPKGHYVKESPHKLEDEIHRLAKKLDKHIALPMEKAHHAESGSSQKEAPLPNMQKY
Ga0214219_100059015F010592N/AMASGGMSTYKPFSQDLHDVYDAPARQAVSTWMQMKKGYEVRENPNRYGVDLICFRSGSPVGALEVEVRQLGFDQHRSIHVAQRKEKLFQEGLPTLFFALTQDLHRAYYLKADLIKDCPLVEVHNRYVGKGEMFYDVPITLFKIANLTDVF
Ga0214219_100059021F069612N/AMMGACKLNPVVVNKMPQDWCGQEIPKEYEEPGITITVAPKATIVAQETTYDINTDAVKPKRGRKKNVNSDL
Ga0214219_100059025F007166GGAMDELYQVMTEMEQRLEIALDNMEYGTELSQDNVDVIRAACGKPNNKRNNLLQSVFEDFGKVFGGSNV
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