NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214220_1007131

Scaffold Ga0214220_1007131


Overview

Basic Information
Taxon OID3300020726 Open in IMG/M
Scaffold IDGa0214220_1007131 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 31JUL2007 hypolimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2014
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015062Metagenome257Y
F016247Metagenome248Y

Sequences

Protein IDFamilyRBSSequence
Ga0214220_10071312F015062N/AMIKKIKAVAPRLSDEDLDPIEKDDSNDLNFPTLIEGWLPWDAEDIADIRRLISERLPPKQQFILEAFLDGLNYTDICVTEKYWRYHFSRGVEFIKKELKL
Ga0214220_10071313F016247N/AMSHFIVEHKIKGYYVMETLTGVEDIDTSRFKDLLGIWVCDSMEELQIMEKHLKEMRDARSSKPA

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