NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214197_1003311

Scaffold Ga0214197_1003311


Overview

Basic Information
Taxon OID3300020694 Open in IMG/M
Scaffold IDGa0214197_1003311 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 09SEP2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1742
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016494Metagenome / Metatranscriptome246N
F024962Metagenome / Metatranscriptome203N
F028417Metagenome / Metatranscriptome191N

Sequences

Protein IDFamilyRBSSequence
Ga0214197_10033111F024962AGAAGMKILKSIIKEQVENKIDPILKEKYQENIALKLFRASIEIIRESVDRLTEMYYFDYPQYEKEDFVKEVELHVFEWKSKVQERSVENITGLDQLLSSKIIDTLEIYLEALEEANIDERQRKLYYVDSFAAVW
Ga0214197_10033113F016494N/AMSQKDNNSEEITIDNFTELTQLVKSTLQTVDELFPPKPEFSFENMVVQFYTLKSRIKRIDPSWKFENTDTSYVFEILKLLDAVNTEEIPDLQQNAKICQRLLHRVRIMRQINPSWSLDVEGIIKFLYPTLNAQLS
Ga0214197_10033114F028417N/ARRLSKEMATNESSDNKNQLITLMLQTIENFVPLETRPAPEGMAIYLYELKKEILRQNPKFKFINSYNDYIFRILTLLDYLDVSKEYDTESHGKTVHMICRETRDIKRIDPLWKINPTSVIEFINSTLSASARK
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