NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214197_1001335

Scaffold Ga0214197_1001335


Overview

Basic Information
Taxon OID3300020694 Open in IMG/M
Scaffold IDGa0214197_1001335 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 09SEP2008 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3217
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023520Metagenome / Metatranscriptome209N
F024962Metagenome / Metatranscriptome203N
F028416Metagenome / Metatranscriptome191N

Sequences

Protein IDFamilyRBSSequence
Ga0214197_10013357F028416N/ALRKKGDSMNEQPINGHAIVTRPERHPNVFRLRRTWLKVAGEALDLLNLIDVTQPNTAADNTLVFGAIYDKVKQLKRIDPDKLVNQDTMVQATVIKYDCPKCLPTDNIYLADYELDC
Ga0214197_10013358F023520N/AMTTTKEGKYVKCCDAKSRDKRIESIDDLLSAINLIFIQNMFEEGDDDTALLHHLYKAKLKALSIKPELTLVNETHLLINKILEGVDGIDTSKEWSHQDNKSKFIEIKQAMTELRLCYPLWKLNRYDIEKYSTCLCPNCDSIDIAGGKTLEKLGGLTLEL
Ga0214197_10013359F024962AGAAGMKILKSIIKEQVENKIDPILKEKYQENIALKLFRASIEIIRESVDRLTEMYYFDYPQHEKEDFVKEVELHVFEWKSKVQERSTENITGLDHLLSSKIIDTLEEYLEALEEADIDERQRKLYYVDSFAAVWNHRKIEDIIRHPWSVELCRRNNWLAEMPKDN
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