| Basic Information | |
|---|---|
| Taxon OID | 3300020689 Open in IMG/M |
| Scaffold ID | Ga0214210_1000049 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Trout Bog Lake, WI - 03AUG2009 epilimnion |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 32513 |
| Total Scaffold Genes | 52 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (13.46%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Trout Bog, Vilas County, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 46.041 | Long. (o) | -89.686 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008423 | Metagenome | 333 | Y |
| F035305 | Metagenome | 172 | N |
| F090396 | Metagenome | 108 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214210_100004913 | F090396 | AGGAG | MCRYKEKGEALPLRVIELVPVAERIPALKEMYGTDKIAAVLSKQITRTLNNFNLRVGMTPEQVADLSYSILDEAESDQLAIQDILLFLDGLPKFKYGKVYDRMDMPTFFEMLEKYREERHQAYINVKEEEHAQFKAMGDSNRTSQDIDKEANRNAMANYLKTK |
| Ga0214210_100004917 | F035305 | N/A | MNHLAIWEIAPTKSDIDALAQNVANELNEGTIKPEDVAVKVAVVEAFAKQLRAKSEEYIIDFLDKCPKGKYDHLGANLALKDSQTYDYAAYSEKWAELQTKIELLKAEQKEIEDNGKKFERGQIPLKSYKQSYTITLNK |
| Ga0214210_100004921 | F008423 | N/A | MEKLNYQGKQLKLHKRAACLLELLKAAQTRQTYHERDLSLWRRGVNDEPIRLFQKEEDILIKIARMNEVQKRILKSYHRLILELYEITDTFHLPINIFL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |