NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214253_105100

Scaffold Ga0214253_105100


Overview

Basic Information
Taxon OID3300020681 Open in IMG/M
Scaffold IDGa0214253_105100 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 21JUL2009 hypolimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1386
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000934Metagenome / Metatranscriptome828Y
F017785Metagenome238Y

Sequences

Protein IDFamilyRBSSequence
Ga0214253_1051002F017785N/AMSQVIAPIQNTNNIRYADFVRIVTPSTEYRFSTAPTAITVPAVDSQPFDGLGQLIGIGKVQRDIKSTANQTTITLVGIDTALLGVVLNGNLKGAQITMWKGFFNTDGSLITSGGSGGLYQYFYGFINTFNIGEQWMEEVRMYVGTVTVSAANIQMILQNRTVGRFTNDSSWEYFTPGDTSMNRVATISTIYYAFGKQ
Ga0214253_1051003F000934N/AMSEQVTIMDQRLVGQAISRNQRISTSEIVTVIPFQFTFKPNSYQLYSQNRSLLANLRYYDKSLEQYLNFASTGWVNYIAYQGDMTSSQISACQWETASAGKNLVLGSLPSISSTSYIVKAGDFCQVDRYAYIATADVMRGSGTTVTIPVHRTLLTTLVSPENAVIGQYGTTVSLGGNTYTGCTFPIILQQYPTYNLIPMTNDSFIQWSGPFKAFESVL
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