NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214169_100848

Scaffold Ga0214169_100848


Overview

Basic Information
Taxon OID3300020677 Open in IMG/M
Scaffold IDGa0214169_100848 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, WI - 13JUN2007 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)2049
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.041Long. (o)-89.686Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016243Metagenome / Metatranscriptome248N
F022593Metagenome / Metatranscriptome213N
F045532Metagenome / Metatranscriptome152N
F073465Metagenome / Metatranscriptome120N

Sequences

Protein IDFamilyRBSSequence
Ga0214169_1008481F073465N/ARYRPAPPAPRIEAVPIRSIEALLMAVIQAMNAIPPSDNFDTALATRLYYTVMCLRRFFPEWGVYLTPVHNSNRIIPHQVDDQGFSELENDSETEPLVSDV
Ga0214169_1008483F045532AGGMETLELIEFPNPYRKTSFKAYLFWTGISTVANHAIANTITCIFIRTYLAMIVALILLFNKNKSIIHRLMIYLIYLEVNPRIRIIENLNYSVMVIRLGMLSMSLEQIILNPNMEIAHAIILIHLIVVAAYLPNYIDTQEAIAKTISYFV
Ga0214169_1008484F022593N/AMNRQEELKFFRDKVEQIRRYKLANHLAKRDIADILLMEDLEAESRRSLAHNHELLGRIDLLLGILEGIGELIIEFKEQEAI
Ga0214169_1008485F016243N/AMNEAQITKIVMRLATRSKWSIEVRRDKVSQMIAEEIQRSDELNQALMELDILLDKLQKVYQEVDDVCEHLLKHYLKSEYIQMHRPSFLNTNTIEDSKAGFIKRLLEVSDSRKSLKLQDSEITTHSIYHKIDPGLRIALNNNIVTLLTIDNELIDLKVIYEFLIENCENE
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