NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210401_10002104

Scaffold Ga0210401_10002104


Overview

Basic Information
Taxon OID3300020583 Open in IMG/M
Scaffold IDGa0210401_10002104 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22316
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (80.95%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012046Metagenome284Y
F017541Metagenome / Metatranscriptome240Y

Sequences

Protein IDFamilyRBSSequence
Ga0210401_100021047F017541GGAGGMRLELFQQIVELNHSFDKLIAGLAKLESVPFFQRELIRHARSDVEIARVYANREFFDNFEVIVENDAKWAYRFQRNFDKKLRDPDDVYLEVRDSEERRKRKGLPPRVVILPNWDMSDEDQYDGEQSGRRKSSPQRRHQMNPKSTKKTGSTTRESVRPQTPKRGGRRR
Ga0210401_100021048F012046AGGAGGMRNQKPAIPRFAPGRRYPGLHGKVVDWIEHKFEEGLLYLHVRFTDKTELCWRISAHMTIEEGDLSNWKPGDLEQLRVFVRDERDESI
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