NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210401_10000345

Scaffold Ga0210401_10000345


Overview

Basic Information
Taxon OID3300020583 Open in IMG/M
Scaffold IDGa0210401_10000345 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)57265
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (65.96%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002771Metagenome / Metatranscriptome531Y
F015923Metagenome / Metatranscriptome251Y
F022274Metagenome / Metatranscriptome215Y

Sequences

Protein IDFamilyRBSSequence
Ga0210401_1000034533F002771AGGAGMKIRVLFLTALMAVSSLAIAQDSMKKGDKAWTDLEKQLADINDQWVCAHKYHKDHAQDCVDFKNKIWPDTFFEISRQGEVTDKQEMVKRQTATATAHPVSPGDAGPNPQDFKLMAVYGNVALATDHTVFKAADASGKIAVTDEATVLRMFVKLDGKWRPAGAALVPMK
Ga0210401_1000034535F022274AGGAGMRNILALVLCMVACRPLPALAQEKSPSGSGNAALEKELYALELKWMKAEFDKKMTGPYSMGELWTDDFFDVLPGGRVVNKQEMMDLMAKTERQPGTGAFPDHFKLMAVYGNVALATDHTVIKGVDAHGKIVVVREMGVLRMFVKEKGKWRVAGAGLVPIVTQ
Ga0210401_100003454F015923AGGAMPHIGMLGAAGETMALLGLGLLWTYRTAAMGWTREVLEIWRGEISGRDPQLSDPAYRRVKPRRPRGALVLVSGVALLFIGQILFLIDLIV
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