NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210395_10000046

Scaffold Ga0210395_10000046


Overview

Basic Information
Taxon OID3300020582 Open in IMG/M
Scaffold IDGa0210395_10000046 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)129473
Total Scaffold Genes114 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)69 (60.53%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000214Metagenome / Metatranscriptome1570Y
F000299Metagenome / Metatranscriptome1341Y
F074116Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0210395_1000004626F074116GGAGGMTKTILLPAVLLGLSLSVAAKDNVMQGTIISESSVDCGTKAKGKKQTTDLMCQEYVIRTEATEYHVRQEKEAHKEMLPVNAPVELTLNKDKMKFKVNGKSYEMLVVSEAAAPAASPAAAATKP
Ga0210395_1000004627F000214AGGMVMKNVYEVLRQKEMELTRLEKEVEALRLVAPLLSEEKEMGLDMGKPALATAVNGPQATARLSVPASPSIPAPQPVRAAGWEDTAKRWP
Ga0210395_1000004681F000299GGGGGMENGQKANGSILPAERYDVGHVQEVIRQAHGELRQLLQQRSEIMKRIGTVKQTISGLANLFGDSVLTEELLELVDRKSSGRQPGFTKACRMILMQAGRAMNARDICDYFQEKMPALLARHKDPMASVTTVLNRLVEYGEAQAVVVNGRRAWRWVAEPLAESVSSPSANLVHAG
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Institute for Fundamental Biomedical Research
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