NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210403_10034604

Scaffold Ga0210403_10034604


Overview

Basic Information
Taxon OID3300020580 Open in IMG/M
Scaffold IDGa0210403_10034604 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4038
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000407Metagenome / Metatranscriptome1172Y
F015679Metagenome / Metatranscriptome253Y

Sequences

Protein IDFamilyRBSSequence
Ga0210403_100346042F000407GGAMLRLTTAAFFFGAIALAGCSGSGYAVRPVPRIAADTVGKPVSVLQEAFGEPRKIDKTSTKMVYVWFLPQKPKEGTPSGFQGCEMEVTVDARSQRVLGYSLSNIGWSTCGDVQRRIRVAQR
Ga0210403_100346045F015679GAGMGYGAATLGAMSKSPNARRIGGPLSWDQLSRPDAEQCQRFLAESLSLLLGDVLRAILSDASPSVAADESAIERYRNLADSLADGESRRRTGLGLTRAGLAKRCVTWLKLLLTPSPNAPSTAAMREFVDALGL

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