NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10289390

Scaffold Ga0210407_10289390


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10289390 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1278
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009917Metagenome311Y
F024902Metagenome204Y
F064567Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_102893901F024902N/AGMSAPGLKDLELPINVLGERVAFQVGTNQAGAWFKVQRFAPSVRVDPWAPVRGVN
Ga0210407_102893903F009917AGGAMGSSGWTYVVVVFSLGAQLVVFLRWMHRRMRDDEIQRVFVRDLALRHLPNIYRALNTIAERQGIHLEEQPMVNYVDMRNGGRHQR
Ga0210407_102893904F064567N/AMPIDAKLLALAQRAAEAEGLDAALVCAVVEQESGWNPWAMRYEPAFFAKYVAPLYTNNK
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