NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10023305

Scaffold Ga0210407_10023305


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10023305 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4601
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F000309Metagenome / Metatranscriptome1327Y
F046579Metagenome / Metatranscriptome151Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_1002330511F046579N/AAMGHVIQVELRTDTTHTLTWLDAALKPKPGMVLHCDGDPRSWTVVHTYNITAQEMRSDHTNWKLAVSVKRGST
Ga0210407_100233054F000309N/AVERGPDPATRRKQTTMNPNGNLERILESAVVNHWADLTRGTPAGLIHIEYGFADGGTLDYLKVWSSLSRGHWLLACEYWMSANTFHAAGIGFENGYQSEGLADVLEVAMQHQSSFVLPSNLGRQGLLQISTPTAEECAAAATLISEVFDRLASPLAQPAVA
Ga0210407_100233057F000042AGGAGMKNIKFVVKVNRSGTRAPEYVQRVDPTPIHMTTNRKLALVMGKFTAEDAAKSLQTSQCIPELVPVEVTA
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