NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10010064

Scaffold Ga0210407_10010064


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10010064 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7055
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005919Metagenome / Metatranscriptome386Y
F011040Metagenome / Metatranscriptome296Y
F020063Metagenome226Y
F035370Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_100100642F005919N/AMAVRKRFWTLLARREGRFLPEFGSFARGDVIVKMSELRRKGVPRSDLKIIASDPDLAAITKDVEALNDA
Ga0210407_100100643F011040N/AMLVYEDNFGFSNVSEREERAFFDFVRRQSVLTTCERCERPVRLIPPTAVCASCVSALEYGAPASMKEYGSQETLLDPARPS
Ga0210407_100100644F020063GGAVRLEKTMIFSNDRTTKDALLNTLGDELAAAWVRFYAIEVDSRPGELEYDRALAAAKKLEAAMVEIVGAARGRPEGDWPF
Ga0210407_100100645F035370AGGAGMSYHQRPHELRLAISSEAEALFSDFGGGAYAEACRRASEASSDSLARDWSVVAGTVARRSGRRSSVLDALFG
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