NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210407_10000088

Scaffold Ga0210407_10000088


Overview

Basic Information
Taxon OID3300020579 Open in IMG/M
Scaffold IDGa0210407_10000088 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)120654
Total Scaffold Genes98 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)58 (59.18%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F000668Metagenome / Metatranscriptome948Y
F081666Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0210407_1000008834F000042AGGAMKNVRFVVKVNRGGSRAPTYVQRVDPAPIQMTTNRKLALLMGKFTAEDAVKSLQTSQCTPELESVQDRA
Ga0210407_1000008840F000668AGCAGMGTVKAIVGILVIVAGIYALFQVVPPELANYSFQDDLKNVAMMGGSNPHTTDQQLIDQVVKKALDHQITLAPEAVTVQRIGTPGAPAVYVAADYSVPVSLPGYSFTLHFTPSSGNKGF
Ga0210407_1000008873F081666N/AMRQAKSFTISNEVLAAIASTKGERSTSERVNELLRRGLELERRERLEQEAAEFFANNVEDVRERAAFQKASKETLSRD
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