| Basic Information | |
|---|---|
| Taxon OID | 3300020579 Open in IMG/M |
| Scaffold ID | Ga0210407_10000027 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 221002 |
| Total Scaffold Genes | 199 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 160 (80.40%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Massachusetts | |||||||
| Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010352 | Metagenome / Metatranscriptome | 305 | Y |
| F014549 | Metagenome / Metatranscriptome | 262 | Y |
| F015764 | Metagenome / Metatranscriptome | 252 | Y |
| F016451 | Metagenome / Metatranscriptome | 247 | Y |
| F079642 | Metagenome / Metatranscriptome | 115 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0210407_10000027131 | F016451 | GAGG | VSSPKTVLRFLSAVAAVAFLPVAASACPACMVGDPKTAGTYLGMTLIMSALPILLACGLGYWLWRRHS |
| Ga0210407_10000027133 | F014549 | GGAG | MTLRNLVEKYLAIAGGFAFLAPLADFGLERAEAERIFSAFDEDYHISRYLHFSQVSGPAYNINGFEQTHISIDSEIQSVL |
| Ga0210407_10000027160 | F079642 | AGGAGG | MKRATLCQSAALLAVFAMTFPGLAKAEVSKQAKESLDKLLLGKEVRPLVEMPATKDGLDVYLVAPHGKRVDDRGLDLGAMSKELKSKGVGVEAEQWETITDVKVDSDRVEIHLGGGGEGRSAANHANKVGAGYLRAGGSRVNFRFMKDVTDTDLSPDAFLNFMGRVLDVSKVKLVVTEKSFSPEIQKAIAAKTVVEGMDYQMVQISFGDPEQKKINDTTDGTFSETWFYLKEGHRWVLTFTNGTVSKVQVY |
| Ga0210407_10000027180 | F010352 | GAG | MPNPANLFRMMTEFIFILLGGFLVWIGLSGRLDPRNFNPRGPAWLGLGAALIYWGARTWAKTARAARTSDRVVARVGGASLAVVGLMMLSLALVEFRWVGYVFAAAGMILALRGILAAVLSLRTD |
| Ga0210407_10000027195 | F015764 | GGAG | MIPRVTVLATLHVVQGAEKRVGNVHDPMYVELLDKLMASEEVDFIFEEASGLGPTIAEKVALDKLGFLRYLDIDPARSNRADFGIPSNSSEPHMIGAPPTVAFANWQVLDVHARREELWLKRMQGHRFESALVICGLVHLLSFAFRLQSAQFSVQAINYANWQRNSP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |