NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208082_1014402

Scaffold Ga0208082_1014402


Overview

Basic Information
Taxon OID3300020563 Open in IMG/M
Scaffold IDGa0208082_1014402 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 09JUN2009 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1738
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000785Metagenome / Metatranscriptome891Y
F009005Metagenome / Metatranscriptome324Y
F093404Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0208082_10144021F000785N/AMRVTNKRLGMKFDCVKLLNWAEELLGPSKCNTIAFTWDSEAEELGWYDWDNIIWINLSECKRMISVQKTILHEWTHAQQTYRWYNHYQLKYGYKKNPYEIAARNNEKLVKRAYKKRK
Ga0208082_10144022F093404N/AMGEQVADNRAPHSTCKLFENKDGEYYPVCQPMETLRLIRGEYHPIGSTLQYPTKWGRKKASLHLVGTKLRDARLELENLQTELAKLERCYSDVLLWEDDSKL
Ga0208082_10144023F009005N/AMSEQEMINYAAELGLEEELVSYAKQIQRQLGSEGDEAFWLDCLEMAYN
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