NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208597_1010679

Scaffold Ga0208597_1010679


Overview

Basic Information
Taxon OID3300020562 Open in IMG/M
Scaffold IDGa0208597_1010679 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 05MAY2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2420
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021094Metagenome / Metatranscriptome220N
F075744Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0208597_10106791F021094AGGAMLTADMKHTLLTVSLLSAAAALSAQSAGSPKMSYDFIRAGYVQGEEIKGLAVSGTALLGEHVLIGGSYQDLTARNLDDVDGEASTFNLGARFGVGSGDIIVGASYGQLQGAGFDGATAVAVAANVTSLGIAYRHSFNETWEAFVSYDRVRTEYAAGSYDLSTGLALGTADSQSDNQFGVAVRCNVTKEIDVTVGYAWVDGDGAFSLSAGYNF
Ga0208597_10106792F075744AGGMTGSEIAGREEKGTGGEMSNSTVHHLFRLWNLAAAEELDIRIQGPLLSFPFGIHYRIVYIDQPYDCGLPCRGNPPKPIDAAHAYPGPLDLPTNPQERVYDKYLLCESRQLGQKPAWHGHKDIPTEIKTFMNSPQGAPGLAWESVWAQYWFNQHHHLRPREVLRWHPRTWPSGARPFKKLKIKDCTDRPYFGLHPDIVALILDLTGRVKGLLEHDGLFHPSTPFELDQLIRKADTVTGLRP

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