NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208231_1000301

Scaffold Ga0208231_1000301


Overview

Basic Information
Taxon OID3300020557 Open in IMG/M
Scaffold IDGa0208231_1000301 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 15JUN2012 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14130
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025976Metagenome / Metatranscriptome199Y
F026862Metagenome / Metatranscriptome196Y
F042183Metagenome / Metatranscriptome158Y

Sequences

Protein IDFamilyRBSSequence
Ga0208231_100030130F026862GGAGMANHVNTSVRFEKLNDAGKAKLQELYSRIQREDKGYEWFSDIFGIDRETSNLYEWNIENVGPKWCYFEDRGEDYFNTVSAWSFPQTGLEWLFEQIASVDPDFIASVMYEDEMPNFFGVYVYNKDGIIDGCEWGEDDEITEMMHEMVPSLRELDQEEQSDVYFGIWSDHIWDLVHDKQDQVYNDIMESLK
Ga0208231_10003014F025976N/AMKQYYEVYENAIVNHPITGARVRGNKLILTTKSRTKALDLYAKNEKTRWVEEITDYGSGESTDIITGVYA
Ga0208231_10003017F042183GGAMVAITSNYLKRSDSAMIRKYSRFVLNRLVRPCVQKKAKVNIKVLGEQEIKDAADLLDLKKYKAWCTYDGLDEEGNKKFTVVLNYKRINKLSKKPITRLKNLLIDLGHELTHVKQYLNNELFDYKSGDVRYKGLFFDASHYMDEEKYFDSPWEVEAYGRELGLYKIFCNKLKEERLSK
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