NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208360_1031115

Scaffold Ga0208360_1031115


Overview

Basic Information
Taxon OID3300020551 Open in IMG/M
Scaffold IDGa0208360_1031115 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)693
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006697Metagenome / Metatranscriptome366Y
F025017Metagenome / Metatranscriptome203N

Sequences

Protein IDFamilyRBSSequence
Ga0208360_10311151F006697N/AMANQVQKVAYVDSKLGVSLPGQQTTRVIYDSVNATAGQQFFEFFTNFAGKTEFQTNLQTNRLDSAESMVIKSIQIIMNTATSNLNDHLNLNIQVGNQTVIKDFDPSFNATNRGLAFDRLHSSFNSQYNVELRLLTDIVIPPQVNFKATLQFGNALVAVNDDVTIIFKGYGRIFSAGNSF
Ga0208360_10311152F025017N/AMASNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGI
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