NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208360_1015906

Scaffold Ga0208360_1015906


Overview

Basic Information
Taxon OID3300020551 Open in IMG/M
Scaffold IDGa0208360_1015906 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1029
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006697Metagenome / Metatranscriptome366Y
F025017Metagenome / Metatranscriptome203N
F031077Metagenome / Metatranscriptome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0208360_10159061F025017N/AMATNMNISYRQGIRNKGFQVTVPTTGATQTLSLSGLAKAFEGIILSST
Ga0208360_10159062F006697N/AMANQVSKLAYVDNKLGVSLPGQQTTRVIYDSVNATVGQQFFQFFTNFAGKNEFQTNLTTNKLDSAESMVIKSIQIIMNSETSNLADHLNLNITVGNQVVLKDFDPSFNSSSRGLSFDRLHSSFSSTRNLEVRLLTEIVIPPQVNFKAELQLSNALVAAGNDITIILKGYGRIFSAGNSF
Ga0208360_10159063F031077N/AFFIPTAADGIAYGGISAGDISVKFDLVIGNKTVIKDATVELGGEQAFYNDGAVASSVIDLEGVGILIPPQVEYYVVAKTFFFSSRDATTSRLGCYLFGTGALLNFNTTI
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