| Basic Information | |
|---|---|
| Taxon OID | 3300020548 Open in IMG/M |
| Scaffold ID | Ga0208856_1000468 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 13JUL2012 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15543 |
| Total Scaffold Genes | 27 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (70.37%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000545 | Metagenome / Metatranscriptome | 1038 | Y |
| F000645 | Metagenome / Metatranscriptome | 962 | Y |
| F001322 | Metagenome | 722 | Y |
| F002241 | Metagenome / Metatranscriptome | 579 | Y |
| F014613 | Metagenome / Metatranscriptome | 261 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208856_100046812 | F002241 | AGG | MAKPHSIRYIRQLMEWGFDKEFIAKDCGINIHSLEVRLNRAKKREQRNGNQGTESGTSSGEFDS |
| Ga0208856_100046813 | F000545 | N/A | MRADAHPFKCSTCLAVTPHIELHRYETSDIPEAPEEVWLIECQRCFLQRIIYPADRVASKEDDITRCDKCGNYKMKAGNCRVCRLAAGFEKQMVRYWNGNETLERPYEDGKAPLY |
| Ga0208856_100046814 | F000645 | GAG | MSNYLDDYVSVQDRLKEFINAYPDYRIKTHILAESLVANCDVYIIKTELYRTEADLHPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKTKPSPKKAIETTKPALAEFIKEQRPNDPEPIVWDVSEIANQLGAEIIDEIPLCSGGDGPMVLKTGTKEGKEYRGWVCPTPKSGHPAKWMRIGSDGHWVFQK |
| Ga0208856_100046817 | F014613 | N/A | MQMLPNLSDEAVIGIIIGVPFIGLYIWSLWNSAKAKAFNEGYKRGRSSVRFTEVLK |
| Ga0208856_100046825 | F001322 | GGCGG | MTLWNPVYRVKVDGVPVTSATLSGLTITSGRTDIYQQPIAGYCNLSLIETAEAAVPYEVNDAVTIEVQDSNGDYVNLFGGFITDLGITVQTSGSTATSQQIKIVAVGALARLARAVYTGNFAHQFDGDRIETLLSTVLFDQWNEVPAAETWNDYDAAVQWEDAENSGLGEIDTPGDYDLHSESNLNDTVYNLASRFATSGLGYLYEDAQGRIGYADSTHRSQYLSTNGYVDLDGNHAIGPALSIVKRAGDVRNAITVGYGVGNAEVSDEDAASIALYGQLATTIRTTLRNQNDAEDQAAFYLLIRAYPQFALRQITFPIASGEIDNSDRDNLLGVFMGQPLNIINLPANMVGGEFQGFVEGWTWTASLNQLNLTLNVSPIAFSLQAFRWNSVPATETWNTISPTLDWLNATIVA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |