Scaffold Ga0208364_1008512

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0208364_1008512

Scaffold Ga0208364_1008512

Overview

Basic Information
Taxon OID	3300020533 Open in IMG/M
Scaffold ID	Ga0208364_1008512 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, WI - 08JUN2012 deep hole epilimnion (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1613
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location Name	Lake Mendota, Madison, Wisconsin, USA
Coordinates	Lat. (^o)	43.098333	Long. (^o)	-89.405278	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015702	Metagenome	252	Y
F026864	Metagenome	196	Y
F073256	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208364_10085124	F073256	GGAGG	MKLQEVDTIQDLREWVEENMPGARLTVDSMGDVVIHTGLHSTMGGYLHEREEE
Ga0208364_10085126	F026864	AGGAG	MSEQDKMAQFVFTVVVIPDNKRYEVELWDFAGAKPDLIAAGEGSNWRTALGEALSRIDLPSDKVEKTINDVIKEGVEDEGV
Ga0208364_10085129	F015702	AGGAGG	MTIKEIELEYTVYNLVKLSRKVYGDNADEYLAGRLESVITYNQMKALIDSLKEEVSE

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