| Basic Information | |
|---|---|
| Taxon OID | 3300020527 Open in IMG/M |
| Scaffold ID | Ga0208232_1006759 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, WI - 24AUG2012 deep hole epilimnion (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1859 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Mendota, Madison, Wisconsin, USA | |||||||
| Coordinates | Lat. (o) | 43.098333 | Long. (o) | -89.405278 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F024559 | Metagenome / Metatranscriptome | 205 | Y |
| F043403 | Metagenome / Metatranscriptome | 156 | Y |
| F077285 | Metagenome / Metatranscriptome | 117 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208232_10067591 | F024559 | GGAGG | MTSILFKLILGVSLIIIVVVLGPILTIWSLNTLFPTLAIPYTLETWAAAALLFTTGS |
| Ga0208232_10067593 | F077285 | AGG | MTDKKLQRLYEQYLEFTDHMCSEHSPLEVAAIMMAQSLTIYKSALGEEEYNLMVDNISNSRNKVKAFTKPILQ |
| Ga0208232_10067594 | F043403 | GGA | MTNTLKTLNTIINNASVPIVTYATNNTSLGGGSSGQFLTSTGNGTSWTNNPADSVLIAKNNPAELEVKGRIVINGRDLEERLTTIEKVLQIPERDVILEKKHPKLKKLYEEYINELSKYKMWQSIKGDND |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |