NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208721_1010175

Scaffold Ga0208721_1010175


Overview

Basic Information
Taxon OID3300020518 Open in IMG/M
Scaffold IDGa0208721_1010175 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, WI - 17AUG2010 deep hole epilimnion (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1288
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota And Trout Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameLake Mendota, Madison, Wisconsin, USA
CoordinatesLat. (o)43.098333Long. (o)-89.405278Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000847Metagenome / Metatranscriptome861N
F001129Metagenome / Metatranscriptome768Y
F060863Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0208721_10101752F000847N/AMSWIKIKQALLDLANNHPQVNSFGTGDPLAVGTDNTINLRTPSRERIVYPLVFADVQSASTDAGTLDLVVGVYFSDRVESIKPMGGVVSGSPTLGWQDNEDEVLSDQLQVAQDFISSLTNDPSEDWTLSSSVSLTRFVESRDDRTAGWQATMTFEIPYSHSVCEIPT
Ga0208721_10101753F001129N/AMLGQGGTMEFINGTVTGKNYDFLVVNTAATFTTLTGTGSENLLTAYNFSGASISAGIVISGRNGGKITAVTPSVGSVIGYTFL
Ga0208721_10101754F060863N/AMLIGYGYGYPTNQLLGGGNPFWLAFNQRADADGALPAEAAVNGCLQTRFLNSFQSYDFFVFYSNSWQPFMQRANTDSANAAEVAFINCLEVRMYNLLNA
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